IL_6P5N_258

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_258 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3484

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6P5N|1|2|G|108
6P5N|1|2|U|109
6P5N|1|2|U|110
6P5N|1|2|A|111
6P5N|1|2|U|112
*
6P5N|1|2|A|349
6P5N|1|2|C|350
6P5N|1|2|G|351
6P5N|1|2|U|352
6P5N|1|2|C|353

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain J

eS8

Chain M

uS17