IL_6P5N_267

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGGAG*CACCGCG

Length

13 nucleotides

Bulged bases

6P5N|1|5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_267 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3568

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6P5N|1|5|C|459
6P5N|1|5|C|460
6P5N|1|5|G|461
6P5N|1|5|G|462
6P5N|1|5|A|463
6P5N|1|5|G|464
*
6P5N|1|5|C|691
6P5N|1|5|A|692
6P5N|1|5|C|693
6P5N|1|5|C|694
6P5N|1|5|G|695
6P5N|1|5|C|696
6P5N|1|5|G|697

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain Ar

eL28