IL_6P5N_279
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_279 not in the Motif Atlas
- Homologous match to IL_8GLP_315
- Geometric discrepancy: 0.1118
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6P5N|1|5|C|4466
6P5N|1|5|A|4467
6P5N|1|5|U|4468
6P5N|1|5|U|4469
6P5N|1|5|G|4470
*
6P5N|1|5|C|4485
6P5N|1|5|C|4486
6P5N|1|5|A|4487
6P5N|1|5|A|4488
6P5N|1|5|G|4489
6P5N|1|5|C|4490
6P5N|1|5|G|4491
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AB
- uL3
- Chain AH
- uL6
- Chain AO
- uL13
- Chain AV
- uL14
- Chain Am
- eL40
Coloring options: