IL_6P5N_280

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_280 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3138

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6P5N|1|5|U|4885
6P5N|1|5|C|4886
6P5N|1|5|C|4887
6P5N|1|5|C|4888
6P5N|1|5|G|4889
*
6P5N|1|5|C|4930
6P5N|1|5|G|4931
6P5N|1|5|U|4932
6P5N|1|5|C|4933
6P5N|1|5|A|4934

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain AM

L14e

Chain AO

uL13