IL_6PC5_007

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC5_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.087

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6PC5|1|I|C|239
6PC5|1|I|C|240
6PC5|1|I|A|241
6PC5|1|I|G|242
6PC5|1|I|U|243
6PC5|1|I|A|244
6PC5|1|I|G|245
*
6PC5|1|I|C|253
6PC5|1|I|G|254
6PC5|1|I|A|255
6PC5|1|I|A|256
6PC5|1|I|C|257
6PC5|1|I|G|258

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15