IL_6PC5_016

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6PC5|1|I|G|801, 6PC5|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC5_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0822

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6PC5|1|I|G|674
6PC5|1|I|A|675
6PC5|1|I|A|676
6PC5|1|I|A|677
6PC5|1|I|C|678
*
6PC5|1|I|G|799
6PC5|1|I|A|800
6PC5|1|I|G|801
6PC5|1|I|A|802
6PC5|1|I|U|803
6PC5|1|I|A|804
6PC5|1|I|G|805
6PC5|1|I|C|806

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4