IL_6PC5_045

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6PC5|1|I|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC5_045 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0983

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6PC5|1|I|C|1319
6PC5|1|I|C|1320
6PC5|1|I|A|1321
6PC5|1|I|A|1322
6PC5|1|I|C|1323
*
6PC5|1|I|G|1331
6PC5|1|I|G|1332
6PC5|1|I|G|1333

Current chains

Chain I

23S ribosomal RNA

Nearby chains