IL_6PC5_094

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC5_094 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0993

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6PC5|1|I|C|2652
6PC5|1|I|U|2653
6PC5|1|I|A|2654
6PC5|1|I|G|2655
6PC5|1|I|U|2656
6PC5|1|I|A|2657
6PC5|1|I|C|2658
*
6PC5|1|I|G|2663
6PC5|1|I|G|2664
6PC5|1|I|A|2665
6PC5|1|I|C|2666
6PC5|1|I|C|2667
6PC5|1|I|G|2668

Current chains

Chain I

23S ribosomal RNA

Nearby chains