IL_6PC5_111

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC5_111 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0626

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6PC5|1|I|U|1851
6PC5|1|I|U|1852
6PC5|1|I|A|1853
6PC5|1|I|A|1854
6PC5|1|I|U|1855
6PC5|1|I|U|1856
6PC5|1|I|G|1857
6PC5|1|I|A|1858
6PC5|1|I|U|1859
6PC5|1|I|G|1860
*
6PC5|1|I|U|1882
6PC5|1|I|U|1883
6PC5|1|I|G|1884
6PC5|1|I|A|1885
6PC5|1|I|U|1886
6PC5|1|I|C|1887
6PC5|1|I|G|1888
6PC5|1|I|A|1889
6PC5|1|I|A|1890
6PC5|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains