3D structure

PDB id
6PC6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 47
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
AAUU*AU
Length
6 nucleotides
Bulged bases
6PC6|1|I|U|846
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PC6_022 not in the Motif Atlas
Homologous match to IL_5J7L_267
Geometric discrepancy: 0.1299
The information below is about IL_5J7L_267
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

6PC6|1|I|A|844
6PC6|1|I|A|845
6PC6|1|I|U|846
6PC6|1|I|U|847
*
6PC6|1|I|A|933
6PC6|1|I|U|934

Current chains

Chain I
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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