IL_6PC7_007

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC7_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0832

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6PC7|1|I|C|239
6PC7|1|I|C|240
6PC7|1|I|A|241
6PC7|1|I|G|242
6PC7|1|I|U|243
6PC7|1|I|A|244
6PC7|1|I|G|245
*
6PC7|1|I|C|253
6PC7|1|I|G|254
6PC7|1|I|A|255
6PC7|1|I|A|256
6PC7|1|I|C|257
6PC7|1|I|G|258

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15