IL_6PC7_016

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6PC7|1|I|G|801, 6PC7|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC7_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0882

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6PC7|1|I|G|674
6PC7|1|I|A|675
6PC7|1|I|A|676
6PC7|1|I|A|677
6PC7|1|I|C|678
*
6PC7|1|I|G|799
6PC7|1|I|A|800
6PC7|1|I|G|801
6PC7|1|I|A|802
6PC7|1|I|U|803
6PC7|1|I|A|804
6PC7|1|I|G|805
6PC7|1|I|C|806

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4