IL_6PC8_026

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_026 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.1127

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6PC8|1|I|G|856
6PC8|1|I|G|857
6PC8|1|I|G|858
6PC8|1|I|G|859
6PC8|1|I|U|860
6PC8|1|I|A|861
6PC8|1|I|G|862
*
6PC8|1|I|C|915
6PC8|1|I|G|916
6PC8|1|I|A|917
6PC8|1|I|A|918
6PC8|1|I|U|919
6PC8|1|I|A|920
6PC8|1|I|C|921

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA