IL_6PC8_051

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

6PC8|1|I|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_051 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0888

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6PC8|1|I|C|1417
6PC8|1|I|G|1418
6PC8|1|I|A|1419
6PC8|1|I|A|1420
6PC8|1|I|G|1421
*
6PC8|1|I|C|1577
6PC8|1|I|U|1578
6PC8|1|I|A|1579
6PC8|1|I|A|1580
6PC8|1|I|G|1581

Current chains

Chain I

23S ribosomal RNA

Nearby chains