IL_6PC8_116

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_116 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0811

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6PC8|1|I|U|1851
6PC8|1|I|U|1852
6PC8|1|I|A|1853
6PC8|1|I|A|1854
6PC8|1|I|U|1855
6PC8|1|I|U|1856
6PC8|1|I|G|1857
6PC8|1|I|A|1858
6PC8|1|I|U|1859
6PC8|1|I|G|1860
*
6PC8|1|I|U|1882
6PC8|1|I|U|1883
6PC8|1|I|G|1884
6PC8|1|I|A|1885
6PC8|1|I|U|1886
6PC8|1|I|C|1887
6PC8|1|I|G|1888
6PC8|1|I|A|1889
6PC8|1|I|A|1890
6PC8|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains