IL_6PCH_016
3D structure
- PDB id
- 6PCH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound 21
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6PCH|1|I|G|801, 6PCH|1|I|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6PCH_016 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.1041
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6PCH|1|I|G|674
6PCH|1|I|A|675
6PCH|1|I|A|676
6PCH|1|I|A|677
6PCH|1|I|C|678
*
6PCH|1|I|G|799
6PCH|1|I|A|800
6PCH|1|I|G|801
6PCH|1|I|A|802
6PCH|1|I|U|803
6PCH|1|I|A|804
6PCH|1|I|G|805
6PCH|1|I|C|806
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L4
Coloring options: