IL_6PCH_032

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

6PCH|1|I|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_032 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.183

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6PCH|1|I|G|997
6PCH|1|I|C|998
6PCH|1|I|U|999
6PCH|1|I|A|1000
6PCH|1|I|A|1001
6PCH|1|I|G|1002
*
6PCH|1|I|C|1153
6PCH|1|I|G|1154
6PCH|1|I|A|1155
6PCH|1|I|A|1156
6PCH|1|I|G|1157
6PCH|1|I|C|1158

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA