IL_6PCH_039

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6PCH|1|I|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_039 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1418

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6PCH|1|I|C|1043
6PCH|1|I|C|1044
6PCH|1|I|C|1045
6PCH|1|I|A|1046
6PCH|1|I|G|1047
6PCH|1|I|A|1048
6PCH|1|I|C|1049
6PCH|1|I|A|1050
6PCH|1|I|G|1051
*
6PCH|1|I|U|1108
6PCH|1|I|C|1109
6PCH|1|I|G|1110
6PCH|1|I|A|1111
6PCH|1|I|G|1112

Current chains

Chain I

23S ribosomal RNA

Nearby chains