IL_6PCH_069

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

6PCH|1|I|A|1899, 6PCH|1|I|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_069 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2295

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6PCH|1|I|U|1841
6PCH|1|I|G|1842
6PCH|1|I|C|1843
*
6PCH|1|I|G|1897
6PCH|1|I|U|1898
6PCH|1|I|A|1899
6PCH|1|I|A|1900
6PCH|1|I|A|1901

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2