IL_6PCQ_031

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6PCQ|1|I|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_031 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.1206

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6PCQ|1|I|C|998
6PCQ|1|I|U|999
6PCQ|1|I|A|1000
6PCQ|1|I|A|1001
6PCQ|1|I|G|1002
*
6PCQ|1|I|C|1153
6PCQ|1|I|G|1154
6PCQ|1|I|A|1155
6PCQ|1|I|A|1156
6PCQ|1|I|G|1157

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA