IL_6PCQ_038

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6PCQ|1|I|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_038 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1522

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6PCQ|1|I|C|1043
6PCQ|1|I|C|1044
6PCQ|1|I|C|1045
6PCQ|1|I|A|1046
6PCQ|1|I|G|1047
6PCQ|1|I|A|1048
6PCQ|1|I|C|1049
6PCQ|1|I|A|1050
6PCQ|1|I|G|1051
*
6PCQ|1|I|U|1108
6PCQ|1|I|C|1109
6PCQ|1|I|G|1110
6PCQ|1|I|A|1111
6PCQ|1|I|G|1112

Current chains

Chain I

23S ribosomal RNA

Nearby chains