IL_6PCQ_102

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

6PCQ|1|I|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_102 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0874

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6PCQ|1|I|G|2737
6PCQ|1|I|A|2738
6PCQ|1|I|U|2739
6PCQ|1|I|A|2740
6PCQ|1|I|A|2741
6PCQ|1|I|G|2742
*
6PCQ|1|I|C|2762
6PCQ|1|I|G|2763
6PCQ|1|I|A|2764
6PCQ|1|I|A|2765
6PCQ|1|I|A|2766
6PCQ|1|I|C|2767

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13