IL_6PCQ_111

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_111 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.0797

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6PCQ|1|J|C|71
6PCQ|1|J|G|72
6PCQ|1|J|A|73
6PCQ|1|J|U|74
6PCQ|1|J|G|75
6PCQ|1|J|G|76
6PCQ|1|J|U|77
6PCQ|1|J|A|78
6PCQ|1|J|G|79
*
6PCQ|1|J|C|97
6PCQ|1|J|G|98
6PCQ|1|J|A|99
6PCQ|1|J|G|100
6PCQ|1|J|A|101
6PCQ|1|J|G|102
6PCQ|1|J|U|103
6PCQ|1|J|A|104
6PCQ|1|J|G|105

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA