IL_6PCQ_118

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_118 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0674

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6PCQ|1|I|U|1851
6PCQ|1|I|U|1852
6PCQ|1|I|A|1853
6PCQ|1|I|A|1854
6PCQ|1|I|U|1855
6PCQ|1|I|U|1856
6PCQ|1|I|G|1857
6PCQ|1|I|A|1858
6PCQ|1|I|U|1859
6PCQ|1|I|G|1860
*
6PCQ|1|I|U|1882
6PCQ|1|I|U|1883
6PCQ|1|I|G|1884
6PCQ|1|I|A|1885
6PCQ|1|I|U|1886
6PCQ|1|I|C|1887
6PCQ|1|I|G|1888
6PCQ|1|I|A|1889
6PCQ|1|I|A|1890
6PCQ|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains