IL_6PCR_016

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6PCR|1|I|G|801, 6PCR|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.077

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6PCR|1|I|G|674
6PCR|1|I|A|675
6PCR|1|I|A|676
6PCR|1|I|A|677
6PCR|1|I|C|678
*
6PCR|1|I|G|799
6PCR|1|I|A|800
6PCR|1|I|G|801
6PCR|1|I|A|802
6PCR|1|I|U|803
6PCR|1|I|A|804
6PCR|1|I|G|805
6PCR|1|I|C|806

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4