IL_6PCR_032

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6PCR|1|I|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_032 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.0767

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

6PCR|1|I|C|998
6PCR|1|I|U|999
6PCR|1|I|A|1000
6PCR|1|I|A|1001
6PCR|1|I|G|1002
*
6PCR|1|I|C|1153
6PCR|1|I|G|1154
6PCR|1|I|A|1155
6PCR|1|I|A|1156
6PCR|1|I|G|1157

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA