IL_6PCR_113

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_113 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0599

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6PCR|1|I|U|1851
6PCR|1|I|U|1852
6PCR|1|I|A|1853
6PCR|1|I|A|1854
6PCR|1|I|U|1855
6PCR|1|I|U|1856
6PCR|1|I|G|1857
6PCR|1|I|A|1858
6PCR|1|I|U|1859
6PCR|1|I|G|1860
*
6PCR|1|I|U|1882
6PCR|1|I|U|1883
6PCR|1|I|G|1884
6PCR|1|I|A|1885
6PCR|1|I|U|1886
6PCR|1|I|C|1887
6PCR|1|I|G|1888
6PCR|1|I|A|1889
6PCR|1|I|A|1890
6PCR|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains