IL_6PCS_007

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCS_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0976

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6PCS|1|I|C|239
6PCS|1|I|C|240
6PCS|1|I|A|241
6PCS|1|I|G|242
6PCS|1|I|U|243
6PCS|1|I|A|244
6PCS|1|I|G|245
*
6PCS|1|I|C|253
6PCS|1|I|G|254
6PCS|1|I|A|255
6PCS|1|I|A|256
6PCS|1|I|C|257
6PCS|1|I|G|258

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15