IL_6PCS_021

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6PCS|1|I|G|776, 6PCS|1|I|A|788, 6PCS|1|I|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCS_021 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.1413

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6PCS|1|I|G|775
6PCS|1|I|G|776
6PCS|1|I|G|777
*
6PCS|1|I|C|787
6PCS|1|I|A|788
6PCS|1|I|A|789
6PCS|1|I|U|790
6PCS|1|I|C|791

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2