IL_6PCS_025

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCS_025 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.0977

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6PCS|1|I|G|856
6PCS|1|I|G|857
6PCS|1|I|G|858
6PCS|1|I|G|859
6PCS|1|I|U|860
6PCS|1|I|A|861
6PCS|1|I|G|862
*
6PCS|1|I|C|915
6PCS|1|I|G|916
6PCS|1|I|A|917
6PCS|1|I|A|918
6PCS|1|I|U|919
6PCS|1|I|A|920
6PCS|1|I|C|921

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA