IL_6PCS_111

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCS_111 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.081

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6PCS|1|I|U|1851
6PCS|1|I|U|1852
6PCS|1|I|A|1853
6PCS|1|I|A|1854
6PCS|1|I|U|1855
6PCS|1|I|U|1856
6PCS|1|I|G|1857
6PCS|1|I|A|1858
6PCS|1|I|U|1859
6PCS|1|I|G|1860
*
6PCS|1|I|U|1882
6PCS|1|I|U|1883
6PCS|1|I|G|1884
6PCS|1|I|A|1885
6PCS|1|I|U|1886
6PCS|1|I|C|1887
6PCS|1|I|G|1888
6PCS|1|I|A|1889
6PCS|1|I|A|1890
6PCS|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains