IL_6PCT_029

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCT_029 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.3248

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6PCT|1|I|G|875
6PCT|1|I|C|876
6PCT|1|I|A|877
6PCT|1|I|A|878
6PCT|1|I|G|879
*
6PCT|1|I|C|898
6PCT|1|I|A|899
6PCT|1|I|A|900
6PCT|1|I|C|901
6PCT|1|I|C|902

Current chains

Chain I

23S ribosomal RNA

Nearby chains