IL_6PCT_116

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCT_116 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0634

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6PCT|1|I|U|1851
6PCT|1|I|U|1852
6PCT|1|I|A|1853
6PCT|1|I|A|1854
6PCT|1|I|U|1855
6PCT|1|I|U|1856
6PCT|1|I|G|1857
6PCT|1|I|A|1858
6PCT|1|I|U|1859
6PCT|1|I|G|1860
*
6PCT|1|I|U|1882
6PCT|1|I|U|1883
6PCT|1|I|G|1884
6PCT|1|I|A|1885
6PCT|1|I|U|1886
6PCT|1|I|C|1887
6PCT|1|I|G|1888
6PCT|1|I|A|1889
6PCT|1|I|A|1890
6PCT|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains