IL_6PJ6_007

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0678

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6PJ6|1|I|C|239
6PJ6|1|I|C|240
6PJ6|1|I|A|241
6PJ6|1|I|G|242
6PJ6|1|I|U|243
6PJ6|1|I|A|244
6PJ6|1|I|G|245
*
6PJ6|1|I|C|253
6PJ6|1|I|G|254
6PJ6|1|I|A|255
6PJ6|1|I|A|256
6PJ6|1|I|C|257
6PJ6|1|I|G|258

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain l

50S ribosomal protein L35