3D structure

PDB id
6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cryo-EM structure of E.coli 50S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
6PJ6|1|I|G|801, 6PJ6|1|I|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PJ6_016 not in the Motif Atlas
Homologous match to IL_7RQB_018
Geometric discrepancy: 0.0695
The information below is about IL_7RQB_018
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.6
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6PJ6|1|I|G|674
6PJ6|1|I|A|675
6PJ6|1|I|A|676
6PJ6|1|I|A|677
6PJ6|1|I|C|678
*
6PJ6|1|I|G|799
6PJ6|1|I|A|800
6PJ6|1|I|G|801
6PJ6|1|I|A|802
6PJ6|1|I|U|803
6PJ6|1|I|A|804
6PJ6|1|I|G|805
6PJ6|1|I|C|806

Current chains

Chain I
23S rRNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain T
50S ribosomal protein L15

Coloring options:


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