3D structure

PDB id
6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cryo-EM structure of E.coli 50S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
AAUU*AU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PJ6_023 not in the Motif Atlas
Homologous match to IL_5J7L_267
Geometric discrepancy: 0.0885
The information below is about IL_5J7L_267
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

6PJ6|1|I|A|844
6PJ6|1|I|A|845
6PJ6|1|I|U|846
6PJ6|1|I|U|847
*
6PJ6|1|I|A|933
6PJ6|1|I|U|934

Current chains

Chain I
23S rRNA

Nearby chains

Chain h
50S ribosomal protein L30

Coloring options:


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