IL_6PJ6_025

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUC*GAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_025 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2351

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6PJ6|1|I|A|849
6PJ6|1|I|U|850
6PJ6|1|I|C|851
*
6PJ6|1|I|G|926
6PJ6|1|I|A|927
6PJ6|1|I|A|928
6PJ6|1|I|U|929

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain h

50S ribosomal protein L30