IL_6PJ6_033
3D structure
- PDB id
- 6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cryo-EM structure of E.coli 50S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UCCCAAAG*CA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6PJ6_033 not in the Motif Atlas
- Homologous match to IL_5J7L_278
- Geometric discrepancy: 0.0616
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6PJ6|1|I|U|1004
6PJ6|1|I|C|1005
6PJ6|1|I|C|1006
6PJ6|1|I|C|1007
6PJ6|1|I|A|1008
6PJ6|1|I|A|1009
6PJ6|1|I|A|1010
6PJ6|1|I|G|1011
*
6PJ6|1|I|C|1150
6PJ6|1|I|A|1151
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L13
- Chain Y
- 50S ribosomal protein L20
Coloring options: