3D structure

PDB id
6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cryo-EM structure of E.coli 50S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GC*GCAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PJ6_075 not in the Motif Atlas
Homologous match to IL_5J7L_318
Geometric discrepancy: 0.0805
The information below is about IL_5J7L_318
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

6PJ6|1|I|G|1933
6PJ6|1|I|C|1934
*
6PJ6|1|I|G|1964
6PJ6|1|I|C|1965
6PJ6|1|I|A|1966
6PJ6|1|I|C|1967

Current chains

Chain I
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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