IL_6PJ6_092

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_092 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1522

The information below is about IL_7A0S_087

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6PJ6|1|I|C|2466
6PJ6|1|I|C|2467
6PJ6|1|I|A|2468
6PJ6|1|I|A|2469
6PJ6|1|I|G|2470
*
6PJ6|1|I|C|2480
6PJ6|1|I|G|2481
6PJ6|1|I|A|2482
6PJ6|1|I|C|2483
6PJ6|1|I|G|2484

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain m

50S ribosomal protein L36