IL_6PJ6_100

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_100 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.065

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6PJ6|1|I|C|2652
6PJ6|1|I|U|2653
6PJ6|1|I|A|2654
6PJ6|1|I|G|2655
6PJ6|1|I|U|2656
6PJ6|1|I|A|2657
6PJ6|1|I|C|2658
*
6PJ6|1|I|G|2663
6PJ6|1|I|G|2664
6PJ6|1|I|A|2665
6PJ6|1|I|C|2666
6PJ6|1|I|C|2667
6PJ6|1|I|G|2668

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain S

50S ribosomal protein L14