3D structure

PDB id
6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cryo-EM structure of E.coli 50S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GG*UAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PJ6_106 not in the Motif Atlas
Homologous match to IL_5J7L_352
Geometric discrepancy: 0.0814
The information below is about IL_5J7L_352
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_66635.5
Basepair signature
cWW-L-cWW
Number of instances in this motif group
27

Unit IDs

6PJ6|1|I|G|2838
6PJ6|1|I|G|2839
*
6PJ6|1|I|U|2878
6PJ6|1|I|A|2879
6PJ6|1|I|C|2880

Current chains

Chain I
23S rRNA

Nearby chains

Chain V
50S ribosomal protein L17

Coloring options:


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