IL_6PJ6_106
3D structure
- PDB id
- 6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cryo-EM structure of E.coli 50S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GG*UAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6PJ6_106 not in the Motif Atlas
- Homologous match to IL_5J7L_352
- Geometric discrepancy: 0.0814
- The information below is about IL_5J7L_352
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_66635.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 27
Unit IDs
6PJ6|1|I|G|2838
6PJ6|1|I|G|2839
*
6PJ6|1|I|U|2878
6PJ6|1|I|A|2879
6PJ6|1|I|C|2880
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain V
- 50S ribosomal protein L17
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