IL_6PJ6_118

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_118 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0474

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6PJ6|1|I|G|1666
6PJ6|1|I|G|1667
6PJ6|1|I|A|1668
6PJ6|1|I|A|1669
6PJ6|1|I|C|1670
6PJ6|1|I|U|1671
6PJ6|1|I|A|1672
6PJ6|1|I|G|1673
6PJ6|1|I|G|1674
*
6PJ6|1|I|C|1990
6PJ6|1|I|U|1991
6PJ6|1|I|G|1992
6PJ6|1|I|U|1993
6PJ6|1|I|C|1994

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain S

50S ribosomal protein L14