IL_6PPF_003

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAG*CUCCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_003 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3488

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.3

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6PPF|1|A|G|42
6PPF|1|A|G|43
6PPF|1|A|A|44
6PPF|1|A|G|45
*
6PPF|1|A|C|480
6PPF|1|A|U|481
6PPF|1|A|C|482
6PPF|1|A|C|483
6PPF|1|A|C|484

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4