IL_6PPF_036
3D structure
- PDB id
- 6PPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 45SRbgA ribosomal particle class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUU*AAGUG
- Length
- 9 nucleotides
- Bulged bases
- 6PPF|1|A|G|1288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6PPF_036 not in the Motif Atlas
- Geometric match to IL_4WF9_110
- Geometric discrepancy: 0.3148
- The information below is about IL_4WF9_110
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.2
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6PPF|1|A|C|1237
6PPF|1|A|G|1238
6PPF|1|A|U|1239
6PPF|1|A|U|1240
*
6PPF|1|A|A|1286
6PPF|1|A|A|1287
6PPF|1|A|G|1288
6PPF|1|A|U|1289
6PPF|1|A|G|1290
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
Coloring options: