IL_6PPF_068
3D structure
- PDB id
- 6PPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 45SRbgA ribosomal particle class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6PPF|1|A|G|2809
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6PPF_068 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.0945
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6PPF|1|A|U|2665
6PPF|1|A|U|2666
6PPF|1|A|G|2667
6PPF|1|A|A|2668
6PPF|1|A|G|2669
*
6PPF|1|A|C|2803
6PPF|1|A|A|2804
6PPF|1|A|A|2805
6PPF|1|A|G|2806
6PPF|1|A|A|2807
6PPF|1|A|U|2808
6PPF|1|A|G|2809
6PPF|1|A|A|2810
6PPF|1|A|G|2811
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
Coloring options: