IL_6PPF_073

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

6PPF|1|A|A|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_073 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.2363

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6PPF|1|A|G|2766
6PPF|1|A|A|2767
6PPF|1|A|U|2768
6PPF|1|A|A|2769
6PPF|1|A|A|2770
6PPF|1|A|G|2771
*
6PPF|1|A|U|2791
6PPF|1|A|G|2792
6PPF|1|A|A|2793
6PPF|1|A|A|2794
6PPF|1|A|G|2795
6PPF|1|A|C|2796

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13