IL_6PPF_083

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

6PPF|1|A|G|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_083 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.27

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6PPF|1|A|G|749
6PPF|1|A|U|750
6PPF|1|A|G|751
6PPF|1|A|A|752
6PPF|1|A|A|753
6PPF|1|A|G|754
*
6PPF|1|A|U|771
6PPF|1|A|G|772
6PPF|1|A|G|773
6PPF|1|A|A|774
6PPF|1|A|G|775
6PPF|1|A|G|776
6PPF|1|A|C|777

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2