IL_6PPF_090

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_090 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1827

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

6PPF|1|A|G|1711
6PPF|1|A|G|1712
6PPF|1|A|A|1713
6PPF|1|A|A|1714
6PPF|1|A|C|1715
6PPF|1|A|U|1716
6PPF|1|A|C|1717
6PPF|1|A|G|1718
6PPF|1|A|G|1719
*
6PPF|1|A|C|2019
6PPF|1|A|U|2020
6PPF|1|A|G|2021
6PPF|1|A|U|2022
6PPF|1|A|C|2023

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14