IL_6PRV_001

3D structure

PDB id

6PRV (explore in PDB, NAKB, or RNA 3D Hub)

Description

58nt RNA L11-binding domain from E. coli 23S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.71 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6PRV|1|A|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

6PRV|1|A|G|1059
6PRV|1|A|U|1060
6PRV|1|A|U|1061
6PRV|1|A|G|1062
*
6PRV|1|A|C|1076
6PRV|1|A|A|1077
6PRV|1|A|U|1078
6PRV|1|A|C|1079

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain C

Large subunit ribosomal RNA; LSU rRNA